Presentation Highlight

Dr. Bardley Erickson from Mayo Clinic gave an outstanding  lecture talk about CAD for Brain Tumors and Other Chronic Diseases, on Jan. 19, 2010.

Dr. Jun Ni gave several lecture talks about cutting-edge-computing technology including cloud computing, multi-core programming, and plug computing. His presentations can be found hereby.

Future Medical Imaging Informatics Conference Events
RSNA2010
SMII Annual Meeting 2011

Presentations

Lab Invited Lecture Talks

2007

The Role of the Windows Environment in Science and Engineering Computing (PDF) 9:30AM-10:30AM, March 19, 2007, 2820 UCC (University Capital Center) Dr. Brian Hammond, Microsoft Inc.

2009

Update on PACS Radiology Informatics, and Work-flow (PDF) 12:00PM-1:00PM, March 9th, 2009, Della Ruppert Conference Room (Lecture Talk Video), Dr. Paul Chang, M.D. Professor and Vice Chairman, Radiology Informatics Medical Director Pathology Informatics, University of Chicago, School of Medicine, Chicago, IL Re-Engineering Radiology in an Electronic World: Radiology as Value Innovator (PDF) 5:00PM-6:00PM, March 9th, 2009, Della Ruppert Conference Room (Lecture Talk Video)  Dr. Paul Chang, M.D. Professor and Vice Chairman, Radiology Informatics Medical Director Pathology Informatics, University of Chicago, School of Medicine, Chicago, IL

2010

Change Detection: A New Form of Computer Aided Diagnosis for Brain Tumors and Other Chronic Diseases (PDF) 12:00PM-1:00PM, Tuesday, Jan. 19th, 2010, Braley Auditorium, 01136 Dr. Bradley Erickson, M.D., Ph.D., FSIIM, Present of SIIM Professor, Diagnostic Radiologist/Neuroradiologist, Chair of Radiology Informatics Division, Mayo Clinic

2011

Using Imaging Informatics to Prepare for the Practice of Radiology in 2018 (PDF) Dr. Eliot L. Siegel, MD, FSIIM Professor of Diagnostic Radiology and Nuclear Medicine, Director, Baltimore Veterans Affairs Medical Center Radiology Assoicate Vice Chairman for Informatics, Diagnostic Radiology & Nuclear Medicine, University of Maryland Medical Center

Lab Members' Presentations

2011

Dr. Jun Ni gave a presentation of Spectrum of Future Medical Imaging Informatics at University of Texas MD Anderson Cancer Center, USA

Dr.  Jun Ni gave a invited series lectures on System of Systems Engineering for 21 century engineering integrations at the summer public programs at the National University of Defense Science and Technology, Changsha, China,

Jun Ni, Computations of Biotransport Phenomena during Nanothermotherapy, Feb. 14, 2011, College of Graduate and Biosciences Programs, University of Iowa, USA

Jun Ni, Emerging Computing Technology for Materials Processing and Mechanical Properties Predictions, invited lecture talk during Tsinghua University’s 100 year anniversary, April, Tsinghua University, Beijing China

Jun Ni, Creative Thinking and Innovation, HPC and Parallel Computing for Medical Imaging with MPI , System of Systems (SOSE) Engineering Concepts and Practices, invited lecture, April, 2011, Beijing Aerospace General Hospital, Space Science and Technology Corp, Beijing, China

Jun Ni, Spectrum of Medical Imaging Informatics, April, Henan Economics and Law University, Zhengzhou, Henan, China

2010

Jun Ni, “Modeling of Biotransport Phenomena during Nanothermotherapy,” Aug. 26, 2010, Graduate Seminar, College of Engineering, University of Iowa

Jun Ni, “Research Domain of Medical Imaging Informatics, Bioscience Programs, Aug. 19, 2010, College of Medicine, University of Iowa

Jun Ni, “Ontology-based Domain of Medical Imaging Informatics,” Department of Electrical and Computer Engineering, the University of Iowa, May 6, 2010

Jun Ni, “Multi-scale Modeling and Petascale Simulation of Biotransport Phenomena during Nanothermotherapy,” School of Mechanical Engineering, Shanghai Jiaotong University, April 12, 2010

Jun Ni, “Data Visualization in Biomedical Science,” The Fifth Sonia Kovalevsky High School Mathematics Day --- Mathematics for Women, University of Iowa, Department of Mathematics, April 3, 2010

Jun Ni, “US Federal Science and Technology & Information Roadmap and Cyberinfrastructure for the 21 Century (CF21),” Department of Computer Science, University of Akron, April 2, 2010

Jun Ni, “Spectrum of CF21-enabled Medical Imaging Informatics” Colloquium at University of Akron, April 2, 2010

Jun Ni, “Multi-scale Modeling and Petascale Simulation of Biotransport Phenomena during Nanothermotherapy,” Weill Cornell Medical College, Cornell University, March 9, 2010

2009

Introduction to CUDA and OpenCL --- Development Interfaces for Multicore Programming Jun Ni, Consortium of College of Computer Science & Technology, Harbin Engineering University, China, Dec. 23, 2009, China, Dec. 23, 2009 (PDF)

Introduction to Cloud Computing Jun Ni, Consortium of College of Computer Science & Technology, Harbin Engineering University, China, Dec. 23, 2009, China, Dec. 22, 2009 (PDF)

Enabling Technology of Multicore Computing for Medical Imaging Junn Ni, Consortium of College of Computer Science & Technology, Harbin Engineering University, China, Dec. 23, 2009, China, Dec. 22, 2009 (PDF)

Multi-scale Modeling and Petascale Simulation of Biotransport in Nanothermotheorapy Jun Ni, Shanghai Jiao Tong University, Medical School, Department of Biomedical Engineering, China, Dec. 14, 2009 (PDF)

Three Dimensional Tomosynthesis in Breasting Imaging and Molecular Imaging Jun Ni & Laruie Fajardo, Shanghai Jiao Tong University, Medical School, Department of Biomedical Engineering, China, Dec. 14, 2009 (PDF)

Ontology-based Medical Imaging Informatics Development and Envision Jun Ni, the 21 Century Forum, Special Invited Lecture,  Shanghai Jiao Tong University, Medical School, China, Dec. 14, 2009 (PDF)

How Do The Shape and Orientation of A Tumor Mass Affect the Accuracy Estimating Its Size Using RECIST? Jun Ni and Simon Kao, Radiology Society of North America (RNSA 2009), Chicago, Dec. 1, 2009 (PDF)

A Multi-scale Modeling and Large-scale Computations of Biotransports in Nanothermo/Chemoradiation Therapies Jun Ni, Workshop of High Performance Computing for Nanoscience and Nanotechnology (HPCNano2009) in ACM/IEEE Supercomputing Conference 2009, Portland, OR, Nov. 15, 2009 (PDF)

High Performance Computing for Medical Imaging and Medical Imaging Informatics Jun Ni, Department of Computer Science, Grinnell College, Nov. 5, 2009 (PDF)

Multi-scale Modeling and Large-scale Simulations of Biotransports in Nanothermo/Chemo-radiation Therapies Jun Ni, Iowa Institute for Biomedical Imaging, the University of Iowa, Oct. 29, 2009 (PDF)

Ontological Domain Modeling of Medical Imaging Informatics Jun Ni, Department of Computer Science, Simpson College, Iowa, Oct. 28,, 2009 (PDF)

Introduction to Hawkeye Radiology Informatics Jun Ni, Mayo Clinic, Rochester, MN, Aug. 10, 2009 (PDF)

Multi-scale Modeling and Simulations in computational science and engineering Jun Ni, Iowa HPC Summer School, the University of Iowa, Aug. 7, 2009 (PDF)

Introduction to Multi-core, Multithread, and GPU Programming Jun Ni, Iowa HPC Summer School, the University of Iowa,, Aug. 7, 2009 (PDF)

Message Passing Interface Programming II Jun Ni, Iowa HPC Summer School, the University of Iowa, Aug. 7, 2009 (PDF)

Message Passing Interface Programming I Jun Ni, Iowa HPC Summer School, the University of Iowa, Aug. 6, 2009 (PDF)

Introduction to Computational Science and Engineering Jun Ni, Iowa HPC Summer School, the University of Iowa, Aug. 6, 2009 (PDF)

Spectrum of Cyber-enabled Radiology Informatics Jun Ni, Minnesota Supercomputing Institute for Advanced Research Computing, University of Minnesota, June 29, 2009 (PDF)

A Multi-scale Model and Simulations of Melting, Crystallization/Solidification in Nano-particle Processing (PDF) Jun Ni, NSF, Research Experience for Undergraduates (NSF-REU) in Nano-science and Nanotechnology, the University of Iowa. June 11, 2009 (PDF)

Orchestra of Informatics in Medical Imaging Jun Ni, Iowa Undergraduate Computer Science Consortium Meeting , April 25, 2009 (PDF)

Effects of Tumor Orientations and Principal Axis Ratios on the Volumetric Measurements of Tumor Ellipsoidal Model Jun Ni and Simon Kao, Faculty Meeting, Department of Radiology, University of Iowa, April 14, 2009 (PDF)

Envisioning Future Radiology Informatics Jun Ni, Faculty Meeting, Department of Radiology, University of Iowa, March 24, 2009 (PDF)

Envisioning Future Radiology Informatics Jun Ni, Electronic and Computer Engineering, Graduate Seminar, University of Iowa, Feb. 5, 2009 (PDF)

Emerging Models and Technologies for Multi-scale Modeling and Simulations of Nanostructured Material Formations and Property Predictions Jun Ni, Xiupeng Wei, Shaoping Xiao, Department of Computer Science, Jan. 30, 2009 (PDF)

2008

Challenges of Modeling and Computations in Nanoscale Electronics and Applications Jun Ni, Graduate Seminar, Department of Electrical and Computer Engineering, University of Iowa, Sept. 11, 2008. (PDF)

Cyberinfrastructure Cyberinfrastructure-enabled Computations for Multidisciplinary Research Jun Ni Summer Faculty Fellowship, Opening, UIUC, National Center for Supercomputing Applications (NCSA), July 25, 2008 (PDF)

Cyber-enabled HPC for Accelerating Medical Imaging & Informatics Research Jun Ni, Summer Faculty Fellowship, Final Report, UIUC, National Center for Supercomputing Applications (NCSA), June 5, 2008 (PDF)

Parallel Monte Carlo Algorithm for Simulation of Photon Migration inside Biological Tissues,” The Iowa Institute of Biomedical Imaging Jun Ni, Seminar, The Iowa Institute of Biomedical Imaging, May 1, 2008 (PDF)

Modeling of Biotransport in Biophysics Systems Using Petascale Computing and Medical Imaging Jun Ni, NSF invited workshop on Biological Communications and Molecular Communications, Feb. 20-21, 2008 (PDF)

Vision of Cyberinfrastructure for Biomedical Imaging Jun Ni, presented at ECE Graduate Seminar and the Iowa Institute of Biomedical Imaging, Feb. 7, 2008 (PDF)

2007

Parallel Monte Carlo Algorithm for Simulation of Photon Migration inside Biological Tissues Jun Ni, Bo Qiang, and Laurie Fajardo, RSNA|07, Chicago, USA, Scientific Paper, Nov. 29, 2007 (PDF)

HPC-enabling Technology for Medical Imaging and Informatics in Integrated Medical Image Informatics Systems Jun Ni, Invited Feature Falk, First Annual Microsoft HPC Summit, in IEEE/ACM SC07, Reno, NV, USA (PDF)

Cyber infrastructure-enabled Computations for the Discovery of Innovative Technology in Medical Imaging through Nanotechnology Jun Ni, HPCNano07, in IEEE/ACM Supercomputing, Nov. 16, 2007, Reno, NV, USA (PDF)

The Role of Large-Scale Computation and Cyber-Enabled Discovery in Multiscale Simulations of Nanostructured Materials Jun Ni and Shaoping Xiao, Multi-Scale Modeling (MSM), NSF Nanoelectronics Workshop, Washington, DC, October 15-16, 2007 (PDF)

A Multi-scale Model for Simulations of Crystallization/Solidification in the Formation of Nano-structured Materials on Large-scale Parallel Computing System Jun Ni and Shaoping Xiao, NSF Nanoelectronics Workshop, Washington, DC, October 15-16, 2007 (PDF)

Medical Imaging High Performance Computing Jun Ni, Information Technology Services, University of Iowa (PDF)

Integration and Implementation of Cyberinfrastructure Jun Ni, NSF-OCI, Aug. 20, 2007 (PDF)

Computational Domains for Explorations in Nanoscience and Technology Jun Ni and Dr. Shaoping Xiao, Tutorial, IMSCCS|07, University of Iowa, August 15, 2007 (PDF)

Cyberinfrastructure-enabled Medical Imaging and Radiology Informatics Jun Ni, presented at IMSCCS|07, University of Iowa, August 15, 2007 (PDF)

Cyberinfrastructure-Enabled Petascale Computing for Nanotechnology (cPCN) Jun Ni, Great Lake Consortium-Petascale Computing Workshop, Northwestern University, Chicago, July 14, 2007 (PDF)

Cyberinfrastructure-Enabled Medical Imaging Informatics Jun Ni, Great Lake Consortium-Petascale Computing Workshop, Northwestern University, Chicago, July 14, 2007 (PDF)

Spectrum of Academic Research Computing Jun Ni, Harvard University, May 16, 2007 (PDF)

Cyberinfrastructure-enabled Radiology Informatics Jun Ni, presented at Department of Radiology, University of Iowa, April 24, 2007 (PDF)

Large-scale High Performance Computing for Medical Imaging Jun Ni, University of Iowa, Center for Computation & Technology, Louisiana State University, April 4, 2007 (PDF)

A Object-Oriented, Geometrical Description about Academic Research Computing Jun Ni, University of Iowa, presented at Carson, Room 60, Dartmouth College, March 30, 2007 (PDF)

2006

Spotlight on UI Spotlight on UI-Based HPC Based HPC Applications in Medical Imaging Applications in Medical Imaging Jun Ni, University of Iowa,presented at Pacific Northwest National Lab, Department of Energy, Dec. 13, 2006 (PDF)

Spotlight on UI-Based HPC Applications in Medical Imaging Jun Ni, Indiana University, Oct. 11, 2006 (PDF)

How to Write and Submit Conference Proceeding Jun Ni, IMSCCS06, June 23, 2006 (PDF)

Tutorial: Computational Domains for Explorations in Nanoscience and Technology Shaoping Xiao and Jun Ni, Tutorial, IMSCCS06, June 23, 2006 (PDF)

2005

P2P-based Medical Imaging Reconstruction in a Heterogeneous Computing Environment Jun Ni, MicroCT Lab of Department of Radiology, University of Iowa, Aug. 19, 2005 (PDF)

Introduction of Message Passing Interface Tao He, MicroCT Lab of Department of Radiology, University of Iowa, Aug. 19, 2005 (PDF)

The Role of the Windows Environment in Science and Engineering Computing (Abstract (PDF) Dr. Brian Hammond, Microsoft, 9:30AM-10:30AM, 2820 UCC (University Capital Center), March 19, 2007

 Jerry Shnoor and Jun Ni, “Cyberinfrastrcutre-Enabled Computational Thinking Machine for Environmental Science,” Oct. 4, 2007, CyberEnviroNetr meeting, University of Iowa

Jun Ni and Shaoping Xiao, “Computational Domains for Explorations in Nano-science and Technology,” Int. Multi-symposiums on Computer and Computational Sciences, 2007, Aug. 15, 2007

Jun Ni, “HPC-enhanced Computations in Nanotechnology,” Harbin Engineering University, June 1, 2007

Jun Ni, “High Performance Computing in Medical Imaging,” Harbin Engineering University, June 1, 2007

Jun Ni, “Scholar Gates at Harvard University: Introduction to Harvard College,” Harbin Engineering University, June 1, 2007

Jun Ni, “Parallel Implementation of Model of Response Accuracy and Response Time in Computerized Testing,” ICCS|07, Beijing, May 28, 2007

Jun Ni, “Cyberinfrastructure-enabled Radiology Informatics,” Department of Radiology, University of Iowa, April 24, 2007

Jun Ni, “Large-scale High Performance Computing for Medical Imaging,” Center for Computation & Technology, Louisiana State University, April 4, 2007

Jun Ni, “A Object-Oriented, Geometrical Description about Academic Research Computing,” Dartmouth College, March 30, 2007

Jun Ni, “Spotlight on HPC Applications in Medical Imaging,” Pacific Northwest National Lab, Department of Energy, Dec. 13, 2006

Jun Ni, “Spotlight on HPC Applications in Medical Imaging,” Department of Electrical and Computer Engineering, Seminar, University of Iowa, Nov. 9, 2006

Jun Ni, “Spotlight on HPC Applications in Medical Imaging,” Computer Science, Colloquium, University of Iowa, Oct. 20, 2006

Jun Ni, “Spotlight on UI-Based HPC Applications in Medical Imaging,” Research Academic Computing, UITS, Indiana University, Oct. 11, 2006

Youping Deng and Jun Ni, “Introduction to Bioinformatics,” IMSCCS|06, June 20-24, 2006 (tutorial)

Jun Ni and Shaoping Xiao, “Computational Nanoscience and Technology,” IMSCCS|06, June 20-24, 2006 (tutorial)

Jun Ni, “How to prepare conference paper and paper submission,” IMSCCS|06, June 20-24, 2006 (Tutorial)

Shaoping Xiao and Jun Ni, “Computational Nanoscience and Technology,” NASA Ames Research Center, April 2006. (Invited talk)

Shaoping Xiao, Jun Ni, Deepak Srivastava (NASA), and Dr. Meyya Meyyappan (NASA), “Computational Domains for Explorations in Nanoscience and Technology,” The First Int. Workshop on High Performance Computing for Nanotechnology (HPCNano|06), Nov. 16, 2005, IEEE/ACM SC2005 (Tutorial)

Shaoping Xiao, Deepak Srivastava (NASA), Dr. Meyya Meyyappan (NASA), Jun Ni, “Computational Domains for Explorations in Nanoscience and Technology,” invited tutorial on International Conference on Computational Science (ICCS’05), Atlanta, Georgia, USA, May 22-24, 2005

Jun Ni, Tao He, and Ge Wang, “Maximum Likelihood Iterative Algorithm for Medical Image Reconstruction on a P2P Distributed Computing Environment,” in Midwest Numerical Analysis Conference, sponsored by NSF and The Institute for Mathematics and its Applications (IMA), May 20-22, 2005, Iowa City, USA

Tao He, Jun Ni, Shaowen Wang, and Boyd Knosp, “Java Grid Computing Library --- A Distributed Programming Solution for Grid Computing,” in the conference proceeding of 2nd International Workshop of Grid and Cooperative Computing (GCC2003), Shanghai, China, 2003

Jun Ni, “Grid Computing and Application Scenarios,” Shanghai University, China, Dec. 2003

Jun Ni, “Applications of Research Computing at UI,” Zhejiang University, Zhejiang, China, Dec., 2003

Jun Ni, “Grid Computing in Medical Image Analysis and Processing,” Shanghai Jiao Tong University, Shanghai, China, Dec. 2003

Shaowen Wang, A. Padmanabham, Y. Liu, R. Briggs, J. Ni, T. He, B. Knosp, and Y. Onel, “A Multi-agent System Architecture for End-user Grid Monitoring Using Geographic Information Systems (MAGGIS): Architecture and Implementation,” in the conference proceeding of 2nd International Workshop of Grid and Cooperative Computing (GCC2003), Shanghai, China, 2003

Tao He, J. Ni, S. Wang, and B. Knosp,”Java Grid Computing Library: A Distributed Programming Solution for Grid Computing," in the conference proceeding of 2nd International Workshop of Grid and Cooperative Computing (GCC2003), Shanghai, China, 2003 

Jun Ni, “NanoGrid: New Computational Infrastructure for Nano-Science and Technologies," poster presentation, Symposium on Nanoscience and Nanotechnology, University of Iowa, Iowa City, USA, Nov 12, 2003

Jun Ni, Tao He, L. Huang, S. Wang, B. Knosp, and C Lin, “Distributed Computation for Diffusion Problem in a P2P-Enhanced Computing System," in the conference proceeding of 2nd International Workshop of Grid and Cooperative Computing (GCC2003), Shanghai, China, 2003 

Jun Ni, “Multi-scale Modeling and Simulation of Nano-materials Process of Monodispersed Particles," poster presentation, Symposium on Nanoscience and Nanotechnology, University of Iowa, Iowa City, USA, Nov 12, 2003

Shaoping Xiao and Jun Ni, “Grid-enhanced Molecular Dynamics Simulation," poster presentation, Symposium on Nanoscience and Nanotechnology, University of Iowa, , Iowa City, USA, Nov 12, 2003.

Shaoping Xiao and Jun Ni, “Multiscale Methods (QM/MM/CM) at Nanoscale, Poster presentation, Symposium on Nanoscience and Nanotechnology, University of Iowa, , Iowa City, USA, Nov 12, 2003

Shaoping Xiao, and Jun Ni, “Grid-enhanced Molecular Dynamics Simulation,” UI research booth, Supercomputing 2003 [9] Jun Ni, Lili Huang, Edward He, John Zhang, Shaowen Wang, and Boyd Knosp, “Distributed Computation for Diffusion Problems in a Grid Computing System,” UI research booth, Supercomputing 2003

Jun Ni, Tao He, John Zhang, Shaowen Wang, and Boyd Knosp, “P2P Parallel Computing using MCMS Architecture,” UI research booth, Supercomputing 2003

Jun Ni, John Zhang, Ching-Long Lin, and Shaowen Wang, “Parallelization of a Lattice Boltzmann Method for Lid-Driven Cavity Flow,” UI research booth, Supercomputing 2003

Shaoping Xiao and Jun Ni “Multiscale Methods (QM/MM/CM) at Nanoscale,” UI research booth, Supercomputing 2003

Shaowen Wang and Jun Ni, “Grid-empowered Knowledge Discovery,” Presentation Series for University Faculty Members Who are Interested in Grid computing, University of Iowa, Iowa City, IA, U.S.A, September, 2002

Jun Ni and Lili Huang, “Hybrid High Performance Networking and High Performance Computing with Java Client/Server Enhanced Technology," poster, Supercomputing Conference 2001 (SC2001), IEEE/Computer Society, Denver, Colorado, Nov. 2001

Jun Ni, “Internet2 Powered Tele-immersive Virtual Applications Using OpenGL and Cave Library," NSC-NSF Joint Conference on NGI Applications, TANets , Taiwan, 1999

Jun Ni, “Web enhanced scientific computing: Science and Engineering online Solution Libraries,” presented at CIC Tech Forum, NCSA, 1998

Modeling and Simulation of Multi-phase, Multi-component Transport Phenomena during Materials Processing,” DOE AMES Lab, Iowa, 1995